NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105016_1200164

Scaffold Ga0105016_1200164


Overview

Basic Information
Taxon OID3300007512 Open in IMG/M
Scaffold IDGa0105016_1200164 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBigelow Laboratory Single Cell Genomics Center (SCGC)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)981
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)247
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045695Metagenome / Metatranscriptome152Y
F061900Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0105016_12001642F061900GGAGGMTDSSSESDSYSQRDEMAAMAGELMEAKMQTQQARNQMTHMLRMGNFHLEIVPHKDIDIEKFFDKTMNNIFERFGKDAFEVKVSGMENLKPSNSGGMHG*
Ga0105016_12001643F045695N/AMKDKRQLFLNIWNKKNSPMRDSIKAKLEVRGIEPTELNCYEYWMGYIKPWADIRGNVHHVNPFRNEAFMRSIGRNKYGTPFKMANRNKKKKRKSRK*

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