Scaffold Ga0105016_1051699

Overview

Basic Information

• Taxon OID: 3300007512
• Scaffold ID: Ga0105016_1051699
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Bigelow Laboratory Single Cell Genomics Center (SCGC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2910
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000563	Metagenome	1022	Y
F001494	Metagenome	683	Y
F006185	Metagenome	379	Y
F011798	Metagenome	287	Y
F087735	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105016_105169910	F011798	AGGAG	MNKKSVEKWVNTAEIGSSVIYYVGSLAVDRCRDGNVADIPNAFAKEAEKGRVDFFQKRKTKMEKSITPKRPIFDYIARKIK*
Ga0105016_105169912	F001494	N/A	MKAKKGKTMQKNKKDPVKEFQRQAVEQRVCLFYVADRVKGILEDSKTDAQLRDQLEEFKDECVHNIGTNALIERYEY*
Ga0105016_10516992	F087735	GAG	MAKQETTNNICQICNGNGYIKITDKEDKKEVNIHQCWKCGSKGEVHGISLENSHLFDDDDYWNYIPNHVPKLK*
Ga0105016_10516996	F006185	AGG	MKEINIKVDNITPKQWTNLLIELNLVKEAWKKYGPTMDIKAKSFKRIIKWGKKKHGDTTEE*
Ga0105016_10516997	F000563	AGGA	MKYKFKVTEDGKPEEEKEAMSFKKLFKSLVTPNPKWTGWIAYKNKKDRYVKHIILKGKRV