 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007512 Open in IMG/M |
| Scaffold ID | Ga0105016_1025349 Open in IMG/M |
| Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Bigelow Laboratory Single Cell Genomics Center (SCGC) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5241 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (76.47%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 247 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033074 | Metagenome | 178 | Y |
| F046427 | Metagenome | 151 | N |
| F081440 | Metagenome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0105016_102534913 | F081440 | GAGG | MIRLDWDNCSYGTMLKRIEIMKRSILIQSIEIRASPSLDGYHCIVNTFGKIPQNYEFTLRREWWDDIRRLNNDMLLYSKARNVLFQKKIYKNMEFKEILMIIVSRKSKYHAWDEQIFDKTQHVLERYL* |
| Ga0105016_10253492 | F033074 | GAGG | MSVPSNVKSIPVYNTGDYGNDLPLHLTTVGLNEQSVTFSSAAITRSLDHTGQPLDAIPHVYSDTDTGLILHEGNDTQFSTAYVFNSDMPAVVYKTSVNVCMGLNVSAHTSGNFNLGNLIVKITEEGASDRVIYENTFASGAANLAGTGTSLHWFTVDVVEPFQVFPNQPIKISLTLDTTLATGTSQAGIVSVSPYVNTAVMKSFAESAIIFHVHADLAHADDVFRFNMQRVSNFGQ* |
| Ga0105016_10253496 | F046427 | GGAG | MTRPKIQNICDFCGKEIAIDSQEYTVQFSQKGAGKGRFVKDQNKADMCHACLLEVGKTGYKFDWITLKKSDESGKWEVIENE* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |