Scaffold Ga0105016_1006000

Overview

Basic Information

• Taxon OID: 3300007512
• Scaffold ID: Ga0105016_1006000
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Bigelow Laboratory Single Cell Genomics Center (SCGC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16500
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (78.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F023710	Metagenome / Metatranscriptome	209	Y
F032033	Metagenome	181	Y
F047915	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105016_100600025	F023710	AGGAG	MQKNIEKQLEGFVRAELSGIVQRIQMTNGTMYLVLDKPSDCDFVHKEIRTFYKENINPEGGVNMYAVGDEFAFDFVPADAEAPVFTDEEESDIDIALNLEAESKEGK*
Ga0105016_100600026	F000302	GGAGG	MVEVMSQDIKDRIRELEGQKVILEDRLEHLSYTGNMVKMVEIEQEIYEIEDTIRKLTA*
Ga0105016_100600034	F047915	N/A	MTKIKSIGISFLDAMWFGAWTIGPVMVFLWAIGFIQIA*
Ga0105016_100600038	F032033	GGAGG	MSERIWEKDYGPFRVFGYVAPEEMDVEEIFDDDASKLNMFHLKQDIAYGKKVWVYATARVFCKGVELGDASMGGLLYKDYDGIKKEIFDEDHQSIVHDALKEARASLNYLKDVKAPPREQLTSQFMEGA*