Scaffold Ga0105016_1004255

Overview

Basic Information

• Taxon OID: 3300007512
• Scaffold ID: Ga0105016_1004255
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Bigelow Laboratory Single Cell Genomics Center (SCGC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20955
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (40.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006483	Metagenome / Metatranscriptome	372	Y
F013467	Metagenome	271	Y
F047724	Metagenome	149	N
F062176	Metagenome	131	Y
F066699	Metagenome / Metatranscriptome	126	Y
F090490	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105016_100425515	F066699	N/A	MKIKIPIYWDFKNQEESEVIVNVPNEAVKKVFMDFLLRKDYDNRREWLIKNVPEINLNTPKELF*
Ga0105016_10042552	F047724	N/A	VFSKDDWAIGLESNDKEYLTRRFWSFWNWKATSGKLDWWTDKFAVFWTDEERFEQAVLDICRTRVLQDIGGETFKGEKGGVDTMAYDLRKEFMANIKDEIFYTHKMRSIELDPHAELQISAENLTDWDAVKA*
Ga0105016_100425533	F013467	GGAGG	MTVGELKNWVWCEDCLEWKDAGEEVSFVNIAEDSFGKDVMTFECDKCEKTNVGIVISSVTRPRGSN*
Ga0105016_100425534	F062176	AGTAG	MQELKTKQKTKMTYEVKITSVDKNFTYVVKAENVLNAEAAALKELGKDIPKDYITAGQYHIDHIENLEATH*
Ga0105016_100425535	F090490	AGTAG	MSGEAFASPLFFKNFKMAHLITVTDLNDQELLFNLDTVVSMERGNNNNTIVTTRWSRTDIKETLDEVKNLAQKSSLHYARIKNQAKD*
Ga0105016_10042554	F006483	N/A	VIRKGLTWTVERAILIEVMGRYIHTDCTYVQDHENGTYTFTGPCKKTGKPYSVTIPGHELWDLNQGELIQDALKSLNADDREFVASGYSPEGWALLWA*