Scaffold Ga0105016_1003232

Overview

Basic Information

• Taxon OID: 3300007512
• Scaffold ID: Ga0105016_1003232
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Bigelow Laboratory Single Cell Genomics Center (SCGC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25418
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (63.27%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013819	Metagenome / Metatranscriptome	268	Y
F046637	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105016_100323219	F013819	AGG	VEFLGNMSKYLSINVKNNIKEFSKKLNGFQKKQIPFVAATTLTDVAFHVRKNAIDKSFPQAFKNSTVASRMAKGRLRVMKAQKRDYNMGRLSSKVLDKSANPLEYLVTHQIGGLKRAKSGNYIAVPSEKIKKKLGNRRNPQWRPTAVRDMSGVRTVKRGKFVKGKAEQAIVKGKELYYSLVKTVPIPKRLFFEENAEKTVQKKIQYIWNDKLSRALSTARWK*
Ga0105016_10032327	F046637	AGGA	MKIKIVKQTFVKGQLAEKGDVIDASENDGNLLIGMGKAIASAEDVKKPENKAVKKKSIFSRKK*