Scaffold Ga0105016_1000878

Overview

Basic Information

• Taxon OID: 3300007512
• Scaffold ID: Ga0105016_1000878
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Bigelow Laboratory Single Cell Genomics Center (SCGC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55543
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (43.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002093	Metagenome / Metatranscriptome	594	Y
F005720	Metagenome / Metatranscriptome	392	Y
F012068	Metagenome	284	Y
F028616	Metagenome / Metatranscriptome	191	Y
F070000	Metagenome / Metatranscriptome	123	Y
F094101	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105016_100087822	F012068	N/A	MNSLAKLFEPSKDRLIGNAKRMMDNAKNPWFEQYWTKVYVHLCKQYKKLN*
Ga0105016_100087828	F094101	N/A	MKFDCFYKVTVTTCVPESINFFEDQEIYHWGYYPYHLVIKGVKELYKEGADAVELEMITQEEFDKIIKPYTP*
Ga0105016_100087856	F005720	AGGAGG	MPATSNNTGIMSRRQSFNGKGLTFIEMIFDDEIATTASSPDTKDSAFEICSEIIQEKGTLLAKSYSLGNKCTEKDAATAASMTEDELIDVYTFIVEGTPGQYNTADSAGDINMDPGQADSSDPGVIADAEADIETEILARLSENDSAASVHVDVRYLPADGVTSAGEEIIYGVNSARVNG
Ga0105016_100087858	F002093	AGGAGG	MAYDSTIPAGGPGNFVSPNLAIEHEGVRVDFITVDYINAMNGEVTHSLASANTAGLKLAIEAIQNQGVNVLGSGALGNSNTEQTYMVRADSLDTISSTTTVAAIQTAIRGLDALTPDKVTATISSATAADRDMSDTQVA*
Ga0105016_100087869	F070000	N/A	MILSYKKQPKKHHRYRIHHDIDIDDDEGLAIVGIILTVIVGVWWGLVHIIDIFFDKLSWWMEPLTIIPFLAVALPTMWVSEMYGRNPMHWWPMVWGTKVTLPDREPFHAYDEKFEKVVEEFGPTRIYVVDYNTLKFRTKKDATLYCLRNLS*
Ga0105016_100087881	F028616	GGAG	MPIVSKQFVEFLNAQVKYKSYSVHHKYHRPAYIKFKTYAQAKSYCIKHNLDHSSSWVLTTVNHC*