Scaffold Ga0105016_1000461

Overview

Basic Information

• Taxon OID: 3300007512
• Scaffold ID: Ga0105016_1000461
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Bigelow Laboratory Single Cell Genomics Center (SCGC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75142
• Total Scaffold Genes: 129
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (47.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 247

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021181	Metagenome / Metatranscriptome	220	Y
F032033	Metagenome	181	Y
F044725	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105016_1000461120	F021181	AGGAG	MTRTLILISLLAGFVLAFLGVIIMIHSGEVWLGLGITLVGFYAVIRATHRTVDSSYD*
Ga0105016_1000461125	F044725	N/A	MFLSPAWAVEVDFTKGSDAQSKAVLADDGKCEDELTEYDRLLAITSASDEDKASALTKRDEAVSLRLTGRNEECETLMQEALTLIPE*
Ga0105016_100046193	F032033	GGA	MERIWEKDYGPFRVFGYVAPEEMDVEEIFENDADNVDEIRADIRMGDKVWVYATARVFCKGVELGDASIGGLLYKDYDGIKKEIFDEDTHDIVHDALKEARASLNYLKDVKAPPREQLTSQFMEGQVY*