Scaffold Ga0105000_1052041

Overview

Basic Information

• Taxon OID: 3300007511
• Scaffold ID: Ga0105000_1052041
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3653
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007259	Metagenome	354	Y
F007344	Metagenome	353	Y
F009034	Metagenome	324	Y
F045087	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105000_105204110	F007344	N/A	MKLTEAGYSYENTSWANDVTASISITCTRLVGEEVQEFEFQIYIPNCDYFDPDNEFFNTYTCAEEGLNIIHNFYRPEDLVEHIQDCTRDVVFTN*
Ga0105000_105204111	F045087	N/A	MDKENLKIKVEALRANEVIANEALSEARTKRARAEQELADAGKPVISCDFAGDLMDLIEEMFSETLNNVCPEDLSPEFGLSYNEIQLECVDMSNIGFCRHDLQ
Ga0105000_10520413	F007259	N/A	MIFDKELRAEVKIQRDAIHSLLKYHLPKCDLTKIGDSEIQLTWNCNPSNIRETLLSCSMYGEWQFEEHQWESFDNYHYSTDLNLDYKANANEVVNKLMKLIK*
Ga0105000_10520414	F009034	N/A	MDNNNMKTIQFLKNNRIQLDGKIWRPYCISDLPNHFGCIGFERDEDGDITRYGVSEWFGYKGFTYIPEN*