Scaffold Ga0105000_1012731

Overview

Basic Information

• Taxon OID: 3300007511
• Scaffold ID: Ga0105000_1012731
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13163
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (23.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021787	Metagenome	217	N
F054936	Metagenome	139	N
F096037	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105000_101273126	F054936	N/A	MRKEEQYYKTPRALRKSGGTKGGVSAAKVAESWEDCDAMPHFTFDKGWWAETKRQVDESYAKLQAKGFFDSTSDYWAKRRNADPRCQGQK*
Ga0105000_101273129	F021787	N/A	MTDMISCEEVFEMDADARAEFDVVCDEWLNEAILAQDAEEDLVECEGCGEQWYAHQAGANGRIEWCRKCYKNDPYYV*
Ga0105000_101273132	F096037	N/A	MKTTVYAWGAEKNNVLHIYAGQTTQKNITTRLNGVKDIVTGPFNSWFVGPEGSTLGAYNLDLIYADTTQNYSRHKEQKAINAVWAVENKYRGAKLPVRAMNTNRAVRLNTKSGGNYTDLRFTSVYGHVLSHINELEASFDEEVFQAIESWIKNKIDDSTTLKRKFEKVIKAKAQKEALIKNIAKALDMSSVLA*