Scaffold Ga0105013_1115018

Overview

Basic Information

• Taxon OID: 3300007510
• Scaffold ID: Ga0105013_1115018
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1844
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015789	Metagenome	252	Y
F042376	Metagenome / Metatranscriptome	158	N
F054936	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105013_11150181	F054936	N/A	MRKEEQYYKTPRALRKSGGTKGGVSAAKVAESWEDCDAMPHFTFDKGWWAETKRQVDESYAKLQAKGFFDSTSDYWAKRR
Ga0105013_11150184	F015789	AGG	MKKSEKKLAIFRDCAILFAVMRDKSMKEKTVKVKGPWVDGVQTVKEISQEEWTSYTPLNTRVKGQWFRVVKW*
Ga0105013_11150186	F042376	N/A	MKNLINKWFKSEVKTYEGAMLRYFYAPMVGVWLTVAIVAGFVTGFDEVWRYWRVVGLNLM