Scaffold Ga0105013

Basic Information
Taxon OID	3300007510 Open in IMG/M
Scaffold ID	Ga0105013_1020229 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0105013_1020229 Open in IMG/M

Source Dataset Name

Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 250-2.7um, replicate a

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Genomics Facility

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8723
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (63.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8723

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (63.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)	Depth (m)	267
Location on Map

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Source Dataset Sampling Location

Location Name

Cariaco Basin, Venezuela

Coordinates

Lat. (^o)

10.5

Long. (^o)

-64.66

Alt. (m)

Depth (m)

267

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F018267	Metagenome	236	Y
F053548	Metagenome	141	Y
F067640	Metagenome	125	Y
F070089	Metagenome	123	Y
F087780	Metagenome	110	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105013_102022917	F070089	GGAGG	VKAGDLVKFDSDLEFDVFEANPRTEHGLVIQISKTGHDTVSAQVLFNDGETWWVDSGRLEVVSESR*
Ga0105013_102022920	F053548	N/A	MKDSGAPSIGDLVVALYDEERDISCVGLVTETKGIECKILWSSENNPIGWWQRSKLKVVSPKGQPGKV*
Ga0105013_102022922	F101902	GAGG	MKVGNLVKRRDDHIHHGIVVEVGPQETAIDHGNRVARIQWNDGDMTYEFIKMLEVLSEGG
Ga0105013_102022925	F087780	GGAG	VKHGDLVKVSFGPNEKPITGIFIEDDTYATALDKDGWTVITHAHVLWEGEVYSTPLDQLEILNECG*
Ga0105013_102022926	F018267	GGAG	MKVGDLISFKPKSFGDEDWSNPGVVLESFESDDRQAGGWKDLLWVVWIDGGKYLVNERNDDVVYLTTP*
Ga0105013_102022929	F067640	AGGAG	MIEVGSLLRMWGNHSKWIALDVIADQVLVVSQKHNHKMWQFKAAFEVVG*
Ga0105013_102022930	F005547	AGGTGG	MKVWVMQGSYEGELFSSVHLTQKGCALACISDITEFLGVDDDETALSVMNDCNPYAETDGDQTEAIEWDQERLKEMPSEQLWKIFSEWCEISWDRMADRSYNLDAIPVEIQA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105013_1020229

Overview

Ecosystem & Geography

Associated Families

Sequences