NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105012_1062724

Scaffold Ga0105012_1062724


Overview

Basic Information
Taxon OID3300007509 Open in IMG/M
Scaffold IDGa0105012_1062724 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1707
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)237
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013357Metagenome272Y
F019113Metagenome231Y
F042854Metagenome157Y
F062279Metagenome131Y
F064629Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0105012_10627243F062279GAGMYERMKAFLHHCLNVVVAVIMVGACGSYVLINSLIMTRVVNDLQLDTYIGIDTGLGIVMLILLLGWGPVWLMRSLSGPGRYTGRL*
Ga0105012_10627244F064629GAGGVTRLYEDLEANVNEHPNRKGLRNFTWTNEAINDWEDIWHQLWRFGYKWEWQNADRYARRRGDIFNLFAVHNDAVRLDMAIPLPGIVVIEEARERILEDTNDAHELDQLVGTIDRWLKKHYAP*
Ga0105012_10627245F013357GGAGGMARARYIPGALVEARNSKYGKGFGIIIAGPWSDTKAASQYRDLSNEQAWFRVHWFEKPGNVDSYYMRRDKGQIDMSKNQIKLLRKK*
Ga0105012_10627246F042854GGAGLTRFDKELERYTRNRMRELRGEAPSPWEDDPYVEAYTSRRIRELQLEHEMAQREIDLDNVVLGGYTVSTMEAYDGTS*
Ga0105012_10627247F019113N/AKFEVGDLVRDNLNEGAGNYGLGVIVKIDVPGLLGEKWGRSDPPADHDIPGKRYAVYFNKFERTITFHGDYLDKV*
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