Scaffold Ga0105011_1079574

Overview

Basic Information

• Taxon OID: 3300007508
• Scaffold ID: Ga0105011_1079574
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1342
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008029	Metagenome / Metatranscriptome	340	N
F054924	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105011_10795742	F008029	N/A	VGLKELAELLDVSYETLKVWKNRDRLPEPFQVISGTPVWDWDTSEEDFRSIEKNANSGRPKKPKISIAGGLIEIDVQGSSKDKDENVSIRVNGKSFVDVKAEPANSNKKSDRNLSIKVLGKKVIDINTDDVIEAGDKISKPVTEVDGEDTNSENS*
Ga0105011_10795743	F054924	GAGG	VKTVEVKIGRIPGIIISLLFLYLTAAVSIFVLKVAFVLAAAVVVFKSFSNQN*