Scaffold Ga0105011_1029500

Overview

Basic Information

• Taxon OID: 3300007508
• Scaffold ID: Ga0105011_1029500
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2889
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021934	Metagenome	216	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105011_10295001	F021934	AGGA	MTDSQFVIVWLSSFLLYLVIYTYWIPLKTQKRIEVWLRSSESDETLLEALEIVVKRIREQTLTDFEEFMMPRARESLQKFWSGAMGNAVKEIGKTEEGSKLQMLSSMAQDLSGQPWYVQAMASKLLPIIENASKTEGGATKVPEIGLGLRK*