Scaffold Ga0105011_1000518

Overview

Basic Information

• Taxon OID: 3300007508
• Scaffold ID: Ga0105011_1000518
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45753
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (79.66%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013093	Metagenome / Metatranscriptome	274	Y
F078818	Metagenome	116	Y
F092205	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105011_10005183	F013093	AGGAGG	MPQPVMTKYKQGDLGMPYPKKKDKMKNLNLSSHNGGEADTSISTKDYPTKPNNHVQSSFWKKASEKDY*
Ga0105011_100051840	F092205	AGGA	MDEEIVLPENKMYIIMTPIGEDQFNIICVDKMQKPINELYYMMRGLCEMSIKHQEDLIEIGKDVVLRANFSKLKDSVKSNVIPFRPRRNNGKK*
Ga0105011_100051856	F078818	N/A	MVGIKKKKLTAEQLDEMNEYMEKLLEENQVLGERCKDFLYNVRKNLLEEINVSDLPRELLVYLLQRELLIVSKNLLPTKNLDHALIIIHEAIADTLKDNLYPPSQEKISIH*