Scaffold Ga0104999_1050689

Overview

Basic Information

• Taxon OID: 3300007504
• Scaffold ID: Ga0104999_1050689
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1890
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Thorarchaeota → Candidatus Thorarchaeota archaeon SMTZ-45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031264	Metagenome	183	N
F096030	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104999_10506891	F096030	N/A	MLRPNLASLSLSVSDTSTKKPIVIHHHNNLTMGGTEKMCQIFLKHFVKDNTFDHYVAYKADGDNTREPYFKEIVGSERMICYESPSKLLSTIHGLKPFILHRYSAGIPEYPFVSEIKQHTKHFVSTSVFGNQDNTIDISKVIYVSKHVQWMANMQGVKNHHVVRNPIEAPYSTENLREELGIPDDAFVFGRIGRDDESIY
Ga0104999_10506892	F031264	AGGAG	MLDPKDVHIILIGCQRTQDYRHNLEIIRYNWLDYGKRVWITTVFNGDQNECASGCGENTFIYLPENTGYGYGALDSFNSGLEFARSGYRPYIAIFNFDVWFLTEEGFVTALNEFVESGKGFAAGYHQTHHWAMTDCMFFRREFLQKLLPIQDRVLASRKANKWLENEMSGTELGFENMEEWMMYSINKAVSDGQVREIRENKTNDDLMNNLDPNISAEWFQLERDGHPRYRYTDKYKLIHEHDDELKKQLLTHHNVKKGHNICKYLGIKIKHNVLNDVRQADGTTMAI*