Scaffold Ga0104999_1034275

Overview

Basic Information

• Taxon OID: 3300007504
• Scaffold ID: Ga0104999_1034275
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2570
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012463	Metagenome	280	Y
F029745	Metagenome	187	Y
F048570	Metagenome	148	Y
F058991	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104999_103427510	F029745	AGGA	MASKAPRVGDVVKSRVSEGAAGYIIAAEGIYVWVRFFDTCHDSAWDVYSRRDTLEVISRANPR*
Ga0104999_10342753	F012463	GGAGG	VKIGDIVKLVAEPQVDWMFNYLEETFQVLDFPTENGVELKMIDAIPDWIWIIGKDNLEVTEESGDGN*
Ga0104999_10342755	F048570	GGAG	VKIGDLVRCRPRTEDENYDEWLGLIISKSYSGQHTVQWVCSDGRGDVEEVNHTPQELVLVNENR*
Ga0104999_10342759	F058991	GAG	MLVRWHGDTQDGDDIDELGIVVQRPSQNFSGHYHIAWSITNTVSHHSPEMVEESLYQGQMEIVQ*