Scaffold Ga0104999_1005745

Overview

Basic Information

• Taxon OID: 3300007504
• Scaffold ID: Ga0104999_1005745
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11236
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (60.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014744	Metagenome / Metatranscriptome	260	Y
F022668	Metagenome	213	Y
F032270	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104999_100574510	F014744	N/A	MDNLNQKLSELKSGNYLIKVTSIGDKRPNKYYSKEYFVTVKYQVTDLNNPKRKFGVIVAGMGAKPIELNVDRELLPTNYFTWESFDEVLFERLARWQNSINQEGYYPKSRDTGQIVDKNNNLKGDK*
Ga0104999_100574514	F032270	N/A	MPKLIPKAKKLAFMCAKCFNTKVDKLAWFFGNSLLWNESLLCRTCFSESFNKLTEKQRKEWAFYANKKPR*
Ga0104999_100574527	F022668	AGG	MEEPVHYLVLLLLQFDGTLVKEVLEFARPMTLMECLDFADDHREVISHYVFEEDDKIINAWFLNDGTGTWQGSMCVQDPDKL*