Scaffold Ga0104999_1005463

Overview

Basic Information

• Taxon OID: 3300007504
• Scaffold ID: Ga0104999_1005463
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11708
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010921	Metagenome / Metatranscriptome	297	Y
F016881	Metagenome / Metatranscriptome	244	Y
F037764	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104999_100546311	F016881	AGGAG	MAVLQDKAWWKSKTIWTSVIAGVVGVLQAAGYVDQVPEVVWTLLASFGLYSVRDAVGKSGPQ*
Ga0104999_10054633	F037764	GGAG	VGLKYIGNNRFDTKVTIKSGGGEVTGSFSVDGAIKEKGLSIPTLIEKMVVDRLGSDGETPDFLNFVPINTDDGEVIITD*
Ga0104999_10054636	F010921	GAGG	MALNAKGGVKIVEGKAYIHPLTLPEIEFLLNLLANAEHKGSDLQKVMQVTYKLREEYKLTVEHNT*