NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104999_1003872

Scaffold Ga0104999_1003872


Overview

Basic Information
Taxon OID3300007504 Open in IMG/M
Scaffold IDGa0104999_1003872 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15502
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (82.76%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)267
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001594Metagenome / Metatranscriptome666Y
F005148Metagenome / Metatranscriptome410Y
F007267Metagenome / Metatranscriptome354Y
F009404Metagenome / Metatranscriptome318Y
F015417Metagenome255Y
F015879Metagenome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0104999_100387210F005148GGAGMKQKKYEEFLKRTLPESEEVECKKCGRSFYDDFNLLCLASLDMCMLCANRNLDKETIKEKYHE*
Ga0104999_100387213F015879GAGMKKDDVIIITCNVCGAMSHAVKTKIPKGYYVKDEFVLCKICFGDLK*
Ga0104999_100387219F015417AGGAGMEDFQILVGILATGSITINIYLIKSMANLCERLAKVEGKLSSQA*
Ga0104999_10038724F007267AGGMKYKIFTCPECKFKKFESINALNVHIGKSHTVDYKISIVNNKPVIKKKARASVQYIKK*
Ga0104999_10038727F001594GGAGMEKTKLTKNEYLESLDPDNLNLEKSDLIDFCHGCIAEWKKNKIANFKYILAMELMIGAVRITPEDVMKTVWKKILVWFWDLQYKNALADDESMLKKLREIGSG*
Ga0104999_10038729F009404AGGAGMSDEPETIQPKGESLVKHCPICGVEFDEIVLTNRWLKCDSCETIFQVKVKAGE*
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