Scaffold Ga0104999_1001093

Overview

Basic Information

• Taxon OID: 3300007504
• Scaffold ID: Ga0104999_1001093
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38215
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (60.61%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Water Column → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049214	Metagenome / Metatranscriptome	147	N
F052865	Metagenome / Metatranscriptome	142	Y
F075433	Metagenome / Metatranscriptome	119	N
F083393	Metagenome / Metatranscriptome	113	Y
F086698	Metagenome	110	N
F106168	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104999_100109312	F052865	AGGA	MSFKGYTSFVKKHLDLRGLGIVVLGLGLPSIATWMVNTGVGSRVRSYVDMVPGMTTKYGKAALAVGLTAGVSYLAAHFGAISAAEAMTASMIGFGLVSVGLLQSMSLPVGGNFVDALPASNLGGLAGGASYGYIGNYNEGVGADMLPQPQSQQLFGVRANVF*
Ga0104999_100109316	F049214	GAG	MANLNQGYRSGNAFGRLANVSYESGIAGDDIALKPGYLLRIRDTYALVTGVEAMSVDLFFTDTVNVGITAVSSSIATDFDGTHGEALEQYGLASISAYYDLGTTTVAEADKTGNILAPDYDSGFITFKALEPYAGNLYHLCPTMPLQPKYMVKDSGDWHSLNAYPPYDTSSGGLPVGFKGDGTAANTEHIGSISAKMYLKQPSGVSKHTLDEASDGESARATASETTLEGMSGFIDGEMSPLANPNWAFGMIIEHGEASLPAFRMVNDSDEYVLDGRCRLVGWKYKILELSQEQLATLKAKAGGRLRFMYYNPVTYQSSGFLSDYLAM*
Ga0104999_100109318	F083393	GGAG	MKIVNKAFKWADKHPLVTFAAGTLGIMYLFENYGPVNGLGQAVFKDSGSGMDTFLRKTGHTGTTAPGTGRWDTVMPSPSGPQVRYDAEYHTQPIMMDPALEKMLAERGPRPVVQNASVRHGHDTHVFAGIKNMNMW*
Ga0104999_100109320	F106168	GAGG	MVKLKTKMTRFYKRNKMLSVGIAAVGVWYLMNQRGMAPALPVAPVKKATSAPVARYAYDAYAPVRNEPYYNTSHFFGPADGDPVFYGF*
Ga0104999_100109328	F075433	AGGAG	MTDELIMAKVNAFAQELRTMGVEDFIFAAGSSSGLLAIQYDGDPRGVSFLAMTVLMNAMFESIDNQAGEVYDGGREDYGE*
Ga0104999_100109330	F086698	N/A	VASEDDTINSQIHGTTGSGNILPISAITQETSTSLLFTRQGREDFASATHPRMSVPSHTIAKQLPLLCGLQDVVAQTGFLLTADSSNTVTCMIGGSSVSATDGLPLVAGQSLMLDIVRMSRIYAIAAADPSGGTCNLFWLDM*