Scaffold Ga0104977_1000167

Overview

Basic Information

• Taxon OID: 3300007368
• Scaffold ID: Ga0104977_1000167
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158499257 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43998
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (87.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104977_100016710	F071329	AGGA	MLPVAKIIIYGLSSIGAGMIASKLTEPIVSNANGIAKILLWFGSVSTGMAASAIVAREVDLQFDATVKAVQEARDHVKIED*
Ga0104977_100016712	F043991	GAG	VSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0104977_100016715	F027205	AGGA	VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0104977_100016716	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNTKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREKDHWYTFRMSDAQKSTFTRHTTTNEKGHQTYDWVLENVEWAADTIRYF*
Ga0104977_100016717	F074985	GAGG	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESSVLFKINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGNTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKRTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMYID*
Ga0104977_10001679	F018385	GGA	METMMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLWCEEVK*