Scaffold Ga0075458_10008541

Overview

Basic Information

• Taxon OID: 3300007363
• Scaffold ID: Ga0075458_10008541
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3283
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F004519	Metagenome / Metatranscriptome	434	Y
F032581	Metagenome / Metatranscriptome	179	N
F060863	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075458_100085411	F032581	N/A	MSMEEITRLTDKVKNDAEWYSERITRYLMENRNSYPLWNSPPSALDTIYPNATNYRTGMVLDRNRRMGISNLDYPYPYGQFGACNDC*
Ga0075458_100085412	F000847	N/A	MSWIKIKQALLDLANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSANTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPNEDWTLLSSVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPS*
Ga0075458_100085413	F001129	N/A	MLGQGGTMEFINGTVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYNFSGASISAGIVISGRNGGKITAVTPSVGSVIGFTFL*
Ga0075458_100085414	F060863	N/A	MLIGYGYGYPTNQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFINSFQSYAFFVFYSNSWLPFMQRANTDSATAAEVRFINCLEVRMYNLLNA*
Ga0075458_100085416	F004519	N/A	MATFRKYAFPKQADADKVLALCTGTTAAVDLGVLDGFICYDILWEGDAPKEATQYETWPEPCGVHSFLGWDEQYTEDYNANKPKSK*