Scaffold Ga0075458_10000072

Overview

Basic Information

• Taxon OID: 3300007363
• Scaffold ID: Ga0075458_10000072
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31573
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (20.75%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F003267	Metagenome / Metatranscriptome	496	N
F005845	Metagenome / Metatranscriptome	388	Y
F006105	Metagenome / Metatranscriptome	381	Y
F007748	Metagenome / Metatranscriptome	345	N
F011581	Metagenome / Metatranscriptome	289	N
F012656	Metagenome / Metatranscriptome	278	N
F024098	Metagenome	207	Y
F046907	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075458_1000007214	F007748	N/A	VNLIETTIIGTVSAIVGGGVAWITKGKFTADSLQVKQAQAVLAMWQSTAEAQHKELTELRNELVVLRQRIESLENTIQQLEAENANLKSLQ*
Ga0075458_1000007217	F011581	AGG	MTYHSTRPAKALTNALERLMIAISPADLEQNHALLCEYRRACELLGYDPAKAQWAGIHEVSASQLPTEQDHTVCYYPLLNPEE*
Ga0075458_1000007231	F005845	N/A	MKPTPTDFRRWQIHIRKECVSCSRPDRSETIKAWSVNWTLLGRILQAKNA*
Ga0075458_1000007232	F046907	N/A	MPKEGEPVLITDKEGMQIVAWIPYGQDVWCSENHTWFTHEVNYWMPIPEIV*
Ga0075458_1000007238	F012656	AGG	MDSLMMVITTLCDCIGAVEESNAPNAFAVKMKIVDKIDELIDKIEY*
Ga0075458_100000724	F006105	AGG	MIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNSTTDFTLLKSANLSNYTERYDKFSLTVGQVETGSYRYEVYDTSSTVSAAVAVVETGLAYVQVVSLTFNTFANSIQYNVYGASAVSIFDSTFDQTFQ*
Ga0075458_1000007243	F003267	N/A	MKLIHYYHIYCGGGGQWQLIMHQHMMALCNYGLIEQLDEIRVGIVGPPEQRKLVKEILENSLVAAKVKVVVTRTNAWEQATLTEMYRASQTEDAAYLYGHTKGSSDPSLINQLWCRSMIFFNIVAWERAIAELEKADAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPGPDKFVITF*
Ga0075458_1000007246	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPALGYKRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFMGWFPKKYDGASHQERAELFKSHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ*
Ga0075458_1000007249	F024098	N/A	MLFKVSGSLTSATNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLVAPTKPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNVAFAGNLEQLELADWSGGTYFPPAPLTANTGKSLTTTQDGTSVSNAIAVVYADSYGYLCYGKGSANTTNAVRVRYRDASNAVTREFFVSEGAASGSTIVRFGSGPMNLNALTSAQCSDGLAGSASFPITEGAGYSIEPIDTLNTGLPYYPVYYRLGPCQRFDSVPVHFVNKYGGIDSYTFTMKNRKRANIEREVFGYNSDVYATTTYNKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGYVWLELNGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNSIL*
Ga0075458_100000728	F000847	N/A	MSWIKIKQALLALANAHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSASTDLGTLNLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQIPYSHSVCEIPT*
Ga0075458_100000729	F001129	N/A	MLGQGGSMRFVDAAVSGQNFDFIVVNTAATFTTLTGSGGEDLLTAYALSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL*