Scaffold Ga0070753_1102027

Overview

Basic Information

• Taxon OID: 3300007346
• Scaffold ID: Ga0070753_1102027
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1120
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003818	Metagenome / Metatranscriptome	467	Y
F045073	Metagenome / Metatranscriptome	153	N
F051094	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070753_11020271	F003818	N/A	FHRNMIVLHPNTEQYNALNGYRYKSSELLFVKDGSDRWIVGTQVLNDSNFAAIHDQLEQLERIEYTPFPPEPDGQS*
Ga0070753_11020272	F045073	GAGG	MKLPVSFTEFSKDPSKAVTYLMLFAVVFLYIRMENQDTSINTGCESRLVKCEQKLDQMAVMLKTQDSLSASLRSELNTYKNLGIIK*
Ga0070753_11020273	F051094	AGGA	MKYLILTALLAVTATPRLETADPYKKYDLVLDHAQTNIELTKASISEAKAMTEDKVQEIQESVLEAKEMAKKVELLERVCEVYSVPVPESMEQLEAERVADSIRVDNMTKLNELDNR*