Scaffold Ga0070752_1002155

Overview

Basic Information

• Taxon OID: 3300007345
• Scaffold ID: Ga0070752_1002155
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12898
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (24.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.130153
  • Long. (^o): -75.249887

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020797	Metagenome	222	Y
F025153	Metagenome / Metatranscriptome	203	N
F079230	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070752_10021551	F079230	N/A	MIDSLIYGIIASSFVIGITRSVLLLYKRFPRLGFGLIYGSLGVKMFALGVFTLLAKPYIENIVIYASIILSAIIYSNVYVLLKLHGK*
Ga0070752_100215511	F020797	GAG	MIKLENILKSIPNQEIVESHLGQWEYPGRITRIPSNTITMQPDPRTGKPIEHILLIIGDQSGERQIGVPGGPNLFFPNDQSVTEYPIAKSKIYKSNQK*
Ga0070752_10021557	F025153	N/A	LIKLKDILIEQIGFQIPGTPKQKNIGRKTRQEFAKFFNNFEAGSTKTAISNYAEQIMRSDAPDEVKEKASEILNEMEKVAIDIQDELHTRQISDDDAAETLFDYVNSEMDAEDSIEFEQLLWYDNQIDSSINSGMIENAVAIMEQLLGQLEFIRGFIIQIFPEISPTGFKR*