Scaffold Ga0070745_1129045

Overview

Basic Information

• Taxon OID: 3300007344
• Scaffold ID: Ga0070745_1129045
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 970
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009001	Metagenome	324	Y
F032086	Metagenome	181	Y
F052535	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070745_11290452	F052535	N/A	MKRHYELLALDKQNLPVRIATITENSKPKAKATGQRLAKALGQRFHDIKLIKE*
Ga0070745_11290454	F009001	GAGG	MSVTIYLTDHNGRKVAFFYRIDNERYLTCPQLIWACRQHPEYQGTAESKEHFIEQAKDVMKQLNRSPKVCDVCEKTLQGMEREGTRCIEHDFQ*
Ga0070745_11290455	F032086	N/A	MTSNSNNEPTFLDMNDLCDDSLEALIQHYLSLKHKMPDNLSVRERLLELEREQFEREKQTEDNQ*