Scaffold Ga0070745

Basic Information
Taxon OID	3300007344 Open in IMG/M
Scaffold ID	Ga0070745_1002179 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10585
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (13.64%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

10585

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (13.64%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070745_100217911	F056150	AGG	VNNKLIKKIENFILYIGREYKVVELEDFKQDIFILLLNKGQDFIIRLDSENSIKKYVYKLCIFQIISERSRYKTKYYIPSHFSSLEDIETYTNTCFKDEVLKDLINSLEGLDKIMLEHLLLCSGNKQCLAKKTNIHQNTIQYKFKELANKIKKNWSINEFYT*
Ga0070745_100217915	F043411	N/A	MKRRLTYNGKRVYIKSLGTKRALVSYYKENDYKMFKVDVKDLADFK*
Ga0070745_100217920	F029278	N/A	MKITIPTKWEDVTIGKYINLRPVLNSELTPINRVINILAVLTGQKKEVIKNISLDQYQSIKEKMSFLETELPRELKNNKFKIGDKWYKFELKAQNLIFAEYINIMEILQSAKDDQEAIFNNLHRILTTICRPIKKRFFMWHNIKMDAELIRETQQNFFDNMPMTIAYPIGVFFYTHSETLTEIIKICLMEEAERLKRETETEIASIKGGDGGKH*
Ga0070745_100217921	F020903	N/A	MSEQLDIFGFDVDQLEEVKIDNPSTLAEVFNNIAADMVFCLKQSVKKEKLTYKGGLLESIKMPVKMFGFRMIATLFLADYYDYVNKGVRGIGGTRKTENGKYITGPMKAWEIKAPDSPYQFKKGPSVNHIKQWAKSKGLNEYAVRTSIAHKGIRPRYFFDNCMKETFYGETFDRFKTDIRVVSGERVAKGLKEILEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070745_1002179

Overview

Ecosystem & Geography

Associated Families

Sequences