Scaffold Ga0070745_1001434

Overview

Basic Information

• Taxon OID: 3300007344
• Scaffold ID: Ga0070745_1001434
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13179
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010211	Metagenome / Metatranscriptome	307	N
F060872	Metagenome / Metatranscriptome	132	N
F088821	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070745_100143411	F088821	N/A	MIDTSRLYSVSKEVVEDIITKETRHPYYSVVLDRAKIMNSWFQAEYDEYTAISSTVFSDKSYIIDQSSIESDDEYRERLGRMKLFPLEQKFLSAQQRIYDENNVNRLYPEGKSFWKWKESNFDDAGCSITEFYRDKVLFVKEVLGFGAIVTDLMMDVDGNPITDEDGKVVPYNYVVRPHEIWNFQMQQGMLTLLVTRQMYYDINNIKKYKWMAYTPEYICVYEETNGKKEKVLDIPNPFGEVPATLLKGQTDANSSFVVGKPRRYSLKGMYLAVSELFYDLKKGSELFGHPIPVLTDSIVRSLAGVADDDKYDSKTIKEGVGMAIIIPDDQQIPSNMLYQADMQGLQHLRDVIFSDLMSMIFLLAQVRDKSVVKSNVSGSAKRFDNVEEQGLLAATAMDMESIETQVIRRMAKVRDEAYEDYMITYSKHYDLSSADEIFSDITEGMQYHALSLPLLKKLTTEYMRKRSMPQEDIEEVMEYFDEYGMPKTTSDLRNLVDILSPEELQRQAQVGIESNSEQ*
Ga0070745_100143415	F060872	N/A	MREADKIWEIPLWETNHSKQRLLQEEAMDFLSYKLGYEMSEETDDPERKAYKHFDGYNHYPDGNLTTDDYDSNLPVWLCADFNRSPHCWALLQVKKARNGLKQYIIFDEIFSKEALTTEQAQKAVALLQKWGIWKVLLSGDNTSNQKSGNYGRVGKNDWDYVREVFDENDIAYKNELDVQNPKRKIRVDKVNNVIYAGTNGERRLLVNTRCENVIKDYMYSIVNDKGLKIDNGDRGHMSDATDYAIWRNEKGNASPMYVLR*
Ga0070745_100143417	F010211	AGGAG	MAPNKPKEISWSEALFSVIGHEPPPDSLELRNSFIENCLADQDGNKVRQAEIHMTMQKAIFDWQKQADAKKARLNGLIRAPYNTGKSQQVPIGLSAYLTTRKHELETLIVSADGGISTKRILSLRSLFDSEVYKYWCREHNFNPIELDRTDTGSTQRIIAKSRNRTGNPTYEAYAVLTQTTGQRAGVLILDDVANDEDRISTARRETVWNKVSNTWIKRVHDKGIVLSVCTPYHPNDANSRLMKSGIFNVLQISVKEDKTGYKVEEWNNLK*