Scaffold Ga0079241_1304039

Overview

Basic Information

• Taxon OID: 3300007340
• Scaffold ID: Ga0079241_1304039
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S5 c16 DCM_A metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 527
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022974	Metagenome / Metatranscriptome	212	Y
F056894	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079241_13040391	F056894	N/A	KNPKTETPKRLIMNLGMRNGKMVGTTELNERMNGATVLARLTEYGMSAFTYANETSAMRARDRWRHSVMNETLSFDVIRGSRVWFVRVSERG*
Ga0079241_13040392	F022974	GAG	VKGDNMERETYYVAKLMKEGEFLSSEIFESMEEARLWAMKETKLLVSDSYLRRCASDDIVVEIDEHFFGYECSVGELIRNSERVL*