Scaffold Ga0079271_1390452

Overview

Basic Information

• Taxon OID: 3300007331
• Scaffold ID: Ga0079271_1390452
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 DCM_A metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 831
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030404	Metagenome / Metatranscriptome	185	Y
F062799	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079271_13904521	F062799	N/A	NISARQVAKTRSIYHDPSIRQALQQRRFATTRGWWAAHRSACGARKPQAPDPQLRVALQQRYGELALQKKPQDSGKVRQLVASTGAVYRAPACDPWSRGQLFR*
Ga0079271_13904522	F030404	N/A	MILALCTSALAFAPPRRGPRWKPLAYGRRDDVERWQATADALTAWRGDEATVAKFWRIDCDDDGFTWERRWPGRKSQIEDVAWDRITRVWECGEWLMMDNFYLIADHDDGEWAVPSGALNYQRLVDVLDRKGIFSTKTYVECQGVSDGGSTICEANPNAKAPAPSTNLSYVDA