Scaffold Ga0104940_1002105

Overview

Basic Information

• Taxon OID: 3300007320
• Scaffold ID: Ga0104940_1002105
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158479027 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10805
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104940_100210513	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIIHDKIDLKNEWIA*
Ga0104940_100210514	F071329	N/A	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSIGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0104940_100210516	F018385	GGA	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNTKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0104940_10021057	F074985	AGGAGG	VELTDGGWYNTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMNKIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID*
Ga0104940_10021059	F027205	AGGA	VASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*