NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104940_1002103

Scaffold Ga0104940_1002103


Overview

Basic Information
Taxon OID3300007320 Open in IMG/M
Scaffold IDGa0104940_1002103 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 158479027 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10812
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081454Metagenome114N
F101359Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0104940_10021032F101359N/AMKKFLSKRSILVGALALVLGFIVSSCSRDKDDDTIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK*
Ga0104940_10021036F081454N/AMKTFKLILLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVKMKMNMNMGSTISTQKKQNNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTRQKIK*

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