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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007314 Open in IMG/M |
| Scaffold ID | Ga0104968_100195 Open in IMG/M |
| Source Dataset Name | Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 861967750 reassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 43677 |
| Total Scaffold Genes | 57 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (84.21%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Maryland: Natonal Institute of Health | |||||||
| Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018385 | Metagenome | 235 | Y |
| F027205 | Metagenome | 195 | N |
| F067847 | Metagenome | 125 | N |
| F071329 | Metagenome | 122 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0104968_10019514 | F071329 | N/A | MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIDIED* |
| Ga0104968_10019515 | F018385 | N/A | MKETTMDEYVNQWESYKELSIENDRNPVLDDQVIYGNDVKHFTLTVYSPEGRVSKYWNTRILADDLGRCRIACPREGKILCFDWFKWTAYMFTHDGLNELVFMPGSSRKTISRLWCEEVK |
| Ga0104968_10019522 | F067847 | AGGA | MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDNKLKETELNNL* |
| Ga0104968_1001959 | F027205 | AGGA | VASRLIVSADDILKAVKESEEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSAK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |