Basic Information | |
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Taxon OID | 3300007291 Open in IMG/M |
Scaffold ID | Ga0066367_1026357 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1979 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean | |||||||
Coordinates | Lat. (o) | -0.015038 | Long. (o) | -22.962334 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007771 | Metagenome / Metatranscriptome | 345 | Y |
F026028 | Metagenome / Metatranscriptome | 199 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0066367_10263573 | F026028 | GAG | MSICSNCYHRVKLNKAIEVGQLWNNEPFLGVVCSDKCKEEIEKKVEDGTWMVMRSFPKSELEDLGLPTALTDKQFGTE* |
Ga0066367_10263574 | F007771 | N/A | MMETIIHAKTIDKKVRLALYGMLHHSATKLFPRRMKYVSIKLHLKHYIFDGVAMIEEDTKITNPRNFKIVIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSGEDYYFSPHEVEAYGLEKGLQLGYTATWNKIETEKENG* |
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