Scaffold Ga0066367_1023902

Overview

Basic Information

• Taxon OID: 3300007291
• Scaffold ID: Ga0066367_1023902
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2067
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -0.015038
  • Long. (^o): -22.962334

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F059074	Metagenome	134	N
F068113	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066367_10239024	F000615	N/A	VSGSERPENIMCRIRTFYECSDGTMGWAEIVLSYDEDIAGHIRHWSTGGRMVITEHIDLV
Ga0066367_10239026	F059074	GGAG	MEIDLSLNRSLEELTSSYFEAYEAGFGCDSFLAVNVNSTAADVSDYYVLENYLSDYGAI*
Ga0066367_10239027	F068113	GGA	MRNEIEKVLEAMREDYKRWSYWSSSYKPNAHSDKKIMNEMIENYCNGLEVTEGSRYWKITSTNGSGTSRSV