Scaffold Ga0101452_111155

Overview

Basic Information

• Taxon OID: 3300007280
• Scaffold ID: Ga0101452_111155
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ18 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6631
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F007645	Metagenome / Metatranscriptome	347	Y
F009922	Metagenome	311	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101452_11115511	F007645	AGGAG	MAKYVYGKRDTKTVKSIYDRASIGEKAIWNFANSLGVNIVRVRKNKERYETTVGDTFVGYHAGKVSIYQQKGNPSRPLSFVRPTPLGKDNNGMQILEVASNLDVQEVLEALKDYQILMTSSLXE*
Ga0101452_1111552	F001521	N/A	MKLWITEFVNEEGVGIGPYIKANTVAEANRIAIQYGLLVLGEIQELEHEVKIEKKMVH*
Ga0101452_1111556	F009922	AGGAG	MENTFDINSFDKDRTSAPASFNQCQAIGYKFAKKGTKMNWKLQKQITGCLYSLAKDERLTFKKAHTILQGKSXRLLCI*