Scaffold Ga0101452_109421

Overview

Basic Information

• Taxon OID: 3300007280
• Scaffold ID: Ga0101452_109421
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ18 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5158
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006845	Metagenome / Metatranscriptome	363	Y
F077165	Metagenome / Metatranscriptome	117	N
F093807	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101452_10942113	F093807	GAG	MTQYSDIVEKQRLKLNKQKDEWYIHVNNGAGYTEVKDGDTLTITYHATGKKEIFIDAN*
Ga0101452_10942115	F006845	AGG	MDLHSYLLEEDFEQYCRMAFERIQTACEFLGIINDENYESFKERCYTQLETDYINSIDKTIH*
Ga0101452_10942116	F077165	AGGAG	MDILGGMASSEEKPQIYFGFKTMGQQFYANGDTPVEFKYLQLDIDTFKSGWGRYTKADGFEYKWDAKFGVVDPKPADDWKRAFSCWVMPDGGHAMLWQRFTVAEAMAFNKMLGTFWHEK