Scaffold Ga0101452_106234

Overview

Basic Information

• Taxon OID: 3300007280
• Scaffold ID: Ga0101452_106234
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ18 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9865
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (69.23%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018178	Metagenome / Metatranscriptome	236	Y
F070064	Metagenome / Metatranscriptome	123	Y
F082548	Metagenome	113	Y
F088835	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101452_10623410	F018178	GAG	MDRILERLSERINEWEGASREAIEAETNFKSYEAATQKAFMDGGASAAKXQKAHMDAGSSAAKAQTETRSTGEWANHYRAVAQASLTAEKLKKQIMLGQLMFDAERTKQANQRRIV*
Ga0101452_10623413	F070064	GGAGG	MGRVKSELMMDGPDDDLVAKPISQTVDNIRHCDLPTNSVERHEYLRTQLKDLINGIKTNTD*
Ga0101452_1062346	F088835	AGG	MMKDIEPSAYIVANQLNFLSGRVVQLLTEYARTKDIKLLEEACNDLATLTARERFIEERFDA*
Ga0101452_1062348	F082548	GAGG	VAQDMVKAMDAAMKQVWDAEPKQERDQGLKRQVFAHVCNNYARRGGYGKTEATD*