NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070747_1074278

Scaffold Ga0070747_1074278


Overview

Basic Information
Taxon OID3300007276 Open in IMG/M
Scaffold IDGa0070747_1074278 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1274
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073278Metagenome / Metatranscriptome120N
F085543Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0070747_10742781F073278N/AMKKLLFLLLPLFCLAQDLKLDHSYTNAEDFKVGDTITIKFNTIQVTNNADPNLYMFDYEYNNKLLQKITHRFKVADNEANTNAQTSLTHWDGFKFKVLSTYDEDNLSAQYLHGWQNRTQVQGDTNSYPTDNDWSVERITIQDGVGITYNNTLIEVDFKIKDKINTNYSNYSNVTHLNWMKARDNSNNTAYDVDAM
Ga0070747_10742782F085543N/ALLFCIVISAQDIKIDNIKNSIQTGPLVNNRDVGFGLKNILEELVQDLNYNLNNKAVDALTVELLYFDVKRTQSNIALYSKSSSQTEIIALAKYKKKKVKVKGTAKDITTSLILLNEQGQFTQNSVSVALKKLSENIIKKLKL*

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