NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070747_1055310

Scaffold Ga0070747_1055310


Overview

Basic Information
Taxon OID3300007276 Open in IMG/M
Scaffold IDGa0070747_1055310 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1514
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096066Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0070747_10553101F096066N/ANLMPTYSLVPEIVRDIRLIPLGSFVSWPSEIIRLTGVAARTALREASSTNVAMQQNGLRKLMGMTLTLGGAGAVMDNVFERYTGVGKDKIEAFRRSFAYDYDRYSRFTAIKEMENNTLTLVNSSYADVWDYLKKPMRAMLNQIGEKDTQVIDNSVRKGFYEAGTEILSPFFSQNLAIEPLVDVNPTDLMGRGGKTPEGYSIYSAETDSWPVQFYKSLQHIGKSSLPGVLLQGKKYGDMIYDMYEGRGDPNAAWQKFVSTITGRKIQRFDLEKIMNQKAGNFSSTIKGDLTLSEDFYRSSDWETRGPNQIEKEFNQIQEESFRQQQKILQFVRDARTLGIQDYKISKALKRLKNDKLVSNLMYGEKFTPYTYYGSAFEKRYETARRDSKLNNRAAPSYSYVYPIGKLESVKANHIGLDLNLSYEENMKIKAEKKKELKQNNIPENNVEPKINDIDQKTLDILNNSKEASLDTPPLPPQPAATQVASATTAPINPATGLTTVETAL

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