Basic Information | |
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Taxon OID | 3300007276 Open in IMG/M |
Scaffold ID | Ga0070747_1014917 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3233 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.124826 | Long. (o) | -75.260873 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011124 | Metagenome / Metatranscriptome | 295 | Y |
F018345 | Metagenome / Metatranscriptome | 235 | Y |
F049291 | Metagenome / Metatranscriptome | 147 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0070747_10149171 | F018345 | N/A | PRKDYLMSSKSINVNVRYWFQSTGLTGQNLSEANQRKFARVATKYKKKTGDKLSKMRCYKASRVAARQLKAEFGTRILSNSITTFELLLTGIDKTLDRKNHVIDFGSFDVDKITDLSCATTGAAAHKKRA* |
Ga0070747_101491710 | F011124 | AGGAG | MFDPDKTYGTLVWDMTIAVWDDDADDYVRNEDGSIKLFDIPNYDYSYICDGIDVDDLHERDEGGTYT* |
Ga0070747_10149176 | F049291 | GAG | MRTKKVNKKAPEWQQQRIKDQSMRVTILNRTFDLDEPEQAAIAAHQGRRYP* |
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