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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007276 Open in IMG/M |
| Scaffold ID | Ga0070747_1001698 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10678 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.124826 | Long. (o) | -75.260873 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045428 | Metagenome / Metatranscriptome | 153 | Y |
| F072848 | Metagenome / Metatranscriptome | 121 | Y |
| F092871 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070747_10016981 | F045428 | N/A | MAIVALITIGMTGAVYAETATVEVPFDSHGSSCSFDELAVEFHCVWQGMIPEPTFESMQEIRDLISADRYQQEIDRLNAEALAEIEAEKAKLTPNEKTILAIEEKLAKGIATATDSVYMNLLKELNTCKQGMDRQTAPFQEAREFEISDFNLWSVNNIKYDGELGEIVMAIEECRAQHKLLKVVGEGYSNMPTGTDDYQFSLLVEYEGIQAVEFDKYTSTSKAIDMSAICDSNAFPNTHKAQHGCEVLYDGKTLEQIQAENDARFGADGKIHYQSELLGKYQEYLNNNFRYATSEHKALEEAIAEPIAQEMIEENAFVQNAMRNE* |
| Ga0070747_10016987 | F072848 | GGA | MTDLINNDRVEIGFNELDIAMEKIVNEHKLNFYEVLSILAMMDTKVKQNNISQYLLETVTKFQELLNKEDQDGR* |
| Ga0070747_10016988 | F092871 | AGGAG | MGRKALYFKQVEHLLSVGYEAKDIVKITNIPKGTVYRIVDKLREEAKINFDQLMTKDYLYKYQMNLDNYSKTIVQCNEEIKTINAKYDQLERIVMESLEVCPPDKYLARSTYLANLINIRNNRTIEIQKLIAQRDKSSEMKAKIFNSGPVVYRINQVVENKVLQPEMLSEQTMPEQTMPELVNNTTVDEKVENIEENDVISEEDLQVLKEMQEDI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |