Scaffold Ga0070747_1001179

Overview

Basic Information

• Taxon OID: 3300007276
• Scaffold ID: Ga0070747_1001179
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12837
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (20.59%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.124826
  • Long. (^o): -75.260873

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001222	Metagenome / Metatranscriptome	743	Y
F003188	Metagenome / Metatranscriptome	502	Y
F056600	Metagenome / Metatranscriptome	137	Y
F057295	Metagenome / Metatranscriptome	136	Y
F059880	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070747_100117924	F057295	GAGG	MVKLICLNNVYYQLVRSITIEQVDGNMEGLKAWRDRLHCDHVLKHQNQYLMVRKVEDVEVE*
Ga0070747_100117925	F059880	AGAAG	MKKLHFQNTEEFERLFKTKDTVITDAIAEAINEAYKFQKKTAKLFEVSFEDAEVAYDISLPSTQWEIALESCLEHYRKEEESDKAIDTFLLQKEVRKWLS*
Ga0070747_100117930	F003188	AGAAG	MKLLKDNIRKILKANIDVSYRISSTEPNKEDMNKKAFKDILTELQKIEERRDFMIDEIGMDMTLYEDQFFSVIENLFKLAFNQQQLELIQMYLYQLVPDKEWDGTIIVQQDKKEKTVSFRTPEDVWNVILELK*
Ga0070747_100117932	F001222	N/A	MKTNQKLILETIKEVITESAKIKFAGHQFMLKVDVNEDPNKKGIKIQFIPTTFGQMSLTQQNDIAIELEQRLEDGLDEYGMKVERDRNLKDKTIIGFFVYIEYLDKIIRQALSSQNPGQPEAVEDEQV*
Ga0070747_10011797	F056600	N/A	MENLEFILGVLSTVGIFLVGYASIGVFKVRTKVKEVNRALDNLFISMDNANRDHYKAISDAESDCQNQIDELYRHIDSRFDKFENKLNK*