Scaffold Ga0101446_100333

Overview

Basic Information

• Taxon OID: 3300007274
• Scaffold ID: Ga0101446_100333
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ13 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25048
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (19.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F005243	Metagenome / Metatranscriptome	407	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101446_10033311	F002047	AGGAG	LPKIRAQDKEDLIKIGMLEKLDGLYKMTPEAKAFCARLDNYFVKAKKKTDIQLMGKNFNDKIHTXNNVKALGENFRWFFETYDYSWDEIIKATRMYVNEYRDKDYLYMQTSQYFISKQDKHRVKHSTLADYCDMIIDGIDTEEEHFKENVV*
Ga0101446_10033343	F005243	N/A	MADVKNLNPDLQDKSPQLTKEELTARREEITQFYKDNIPHLTVQAEYEALLAEIDKSRAERLQAQLFLAQAAAAQKENAEGPSSEEKAFKEAMENAAANVE*