Scaffold Ga0099794

Basic Information
Taxon OID	3300007265 Open in IMG/M
Scaffold ID	Ga0099794_10058470 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1869
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

1869

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F006575	Metagenome / Metatranscriptome	370	Y
F057529	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099794_100584701	F002850	N/A	VTSIHADIDAMKGLHEALVRYRHAQREVAGRGAEEIRVVRASLEAKASRWRARLEQCQAELAACQERAAQAAGDGPKAGDGRAAGWGPPAGDGPVDCSGYARAAEQCGDRLEQIRRWQQRIDAEASEFQGTAGRFADLLENDLPRTEEHLLAVISSLEAARRVQAPGS*
Ga0099794_100584702	F001698	AGGAGG	MAGVINDIEALAEFRAHLMRFNHDLAENFATIQGYWRELGEVWRDDMYRLFGEALEEVTPGITQYLSATEGHEAHLAALIERLRGYLETGAGAGLGVGRSETGRGTDRRDQHPR*
Ga0099794_100584703	F006575	GGAG	MSEQERVIDPAMATSPYLCLRQAVRPAILVHSLLAGDQERAGKLAAECEDLLVLTGELLKAAGQARILAAPEPEMPDSLQSAGDRHAQLLDAYAEAGLMWAKIVGCSVALAGAMIDRGEWDDVRRLAGFLAGAGEESAAADLRVRLGKAVFHAHRERLRGISNKMPPTGIAEAINALRAVLRDVPEDFPDRNREVNRFLAPLASAIHAIMKDQDIDIPFSSRVEHIATGGVAKYPDIVTISLDELAAEFEGICS*
Ga0099794_100584704	F057529	N/A	RVLSPAESDALLGVSVAASLDDDRALYRDTEWPAEQVEKFKPYSTASLYAFAREGFLSGRWSP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099794_10058470

Overview

Ecosystem & Geography

Associated Families

Sequences