Scaffold Ga0099794_10012332

Overview

Basic Information

• Taxon OID: 3300007265
• Scaffold ID: Ga0099794_10012332
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3685
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022744	Metagenome	213	Y
F051833	Metagenome	143	N
F064596	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099794_100123323	F022744	AGGA	MTRTGTIALSVIGIISSALLLFCGAWVAIFAFALSIDAPHAWKGDVRIGLIYGLVALALIIGAILLLRGSIRRLRSLRHVRMPDRNLR*
Ga0099794_100123326	F064596	AGG	MFIAAILIIVGIGFATEVPHNLNGNLGKGIFAWLLAIAMTFIAVVLYRHSIRLLHSLPMARSVIEIILAGFLLLCAGFVAILGFGVAEGGAHAFPGDVRVGMVGWLMALAITIIAILLFRRSSRRLRSLRELRLHESKLRSEMRKR*
Ga0099794_100123327	F051833	GAG	MRWKLLVGLAITWFGLGIMGLFQHAGIIPLDTPLFWTLMGPALLEMLPAMLFQCTGNCVDGFFVDSAHGPPFLTVPGILLVYVLPSALLASWALRKLLARTPSSSTGHVGEE*