Scaffold Ga0099794_10004117

Overview

Basic Information

• Taxon OID: 3300007265
• Scaffold ID: Ga0099794_10004117
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5666
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F018221	Metagenome / Metatranscriptome	236	Y
F047513	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099794_100041175	F047513	GGAGG	LNYKTQPPWEFLLSASRNSLQSYELSRLSHAANLRKEITQLLDSWLEENTAAMLARWLMEQRERPATREQSEPAIAATSNGDRSPATDTRSKTAQVVSDNFFADQTGSPPDFRSRP*
Ga0099794_100041176	F018221	AGG	VVPTQREVSRDVMLAAGKYGAWMTLRELGRLTRYGETSISAQLRHLRKANCGGYVLEKRVRKAEVIGAEEHFVVWEYRLTPRRTCANRAEESRRRRRG*
Ga0099794_100041177	F000188	GGAG	MSVKPELAFDVCWEVYRGAREVLEAKRGMSAMDWKEATKYLWRPDFRPRLGEWVADFALAGQAALAGPEWASRMVMFRLHYLGLAPYENARHFLGLSEQGWVNWSEEVRRRCGKELLRRGMFPPRKYFRNAC*