Scaffold Ga0099794

Basic Information
Taxon OID	3300007265 Open in IMG/M
Scaffold ID	Ga0099794_10000107 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	30372
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (54.76%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005875	Metagenome / Metatranscriptome	387	Y
F014244	Metagenome / Metatranscriptome	264	N
F016951	Metagenome	243	Y
F104941	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

387

Metagenome / Metatranscriptome

264

Metagenome

243

Metagenome

100

Protein ID	Family	RBS	Sequence
Ga0099794_1000010717	F016951	N/A	MERELAIKLESSEIQYQTQIEVPITTADFFFARATTYARFRRWRPHLTDSQMIKDEELRSLLRKRGYKVVELAYNSYSDKKRDDLYQQLLNNLGRE*
Ga0099794_1000010725	F005875	AGG	MIIGLTGGSLFLLAGFLSLLPWAVSGSIAGVLLGGWFGGEIKKRLDKGGNEGGKETRVIRFRKKALLEDNVSEMRTAGWEPRWESYRETQTGLLVRRIVYSVVMERKQRKHEFKGLRQLSKLLFPHKQHS*
Ga0099794_1000010728	F104941	AGGTGG	LFPDKAKMVRSANALFVTLAVATGVYLVIAILLTFGKPGFARDPNIIPWLFLGLALVSLANIGVTVFVQTSKKLMSERLRYDPISRTYLIMSTGAILSEAHAIYGLVLTLLSGSVFYGVGFTIVALASLWWVWKRFKQSLASLPNE*
Ga0099794_100001074	F014244	N/A	MVAFGEQTYTLLMGEARARGITIQELLRAVVIPDWFKAKYEPVPRQNPVIERRTREEEPVLPTSFSNKLRY*

Protein ID

Family

RBS

Sequence

Ga0099794_1000010717

N/A

MERELAIKLESSEIQYQTQIEVPITTADFFFARATTYARFRRWRPHLTDSQMIKDEELRSLLRKRGYKVVELAYNSYSDKKRDDLYQQLLNNLGRE*

Ga0099794_1000010725

AGG

MIIGLTGGSLFLLAGFLSLLPWAVSGSIAGVLLGGWFGGEIKKRLDKGGNEGGKETRVIRFRKKALLEDNVSEMRTAGWEPRWESYRETQTGLLVRRIVYSVVMERKQRKHEFKGLRQLSKLLFPHKQHS*

Ga0099794_1000010728

AGGTGG

LFPDKAKMVRSANALFVTLAVATGVYLVIAILLTFGKPGFARDPNIIPWLFLGLALVSLANIGVTVFVQTSKKLMSERLRYDPISRTYLIMSTGAILSEAHAIYGLVLTLLSGSVFYGVGFTIVALASLWWVWKRFKQSLASLPNE*

Ga0099794_100001074

N/A

MVAFGEQTYTLLMGEARARGITIQELLRAVVIPDWFKAKYEPVPRQNPVIERRTREEEPVLPTSFSNKLRY*

NMPFamsDB